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UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
WASHINGTON, D.C. 20549
SCHEDULE 13G
UNDER THE SECURITIES EXCHANGE ACT OF 1934
(AMENDMENT NO. 2)*
Illumina, Inc.
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(Name of Issuer)
Common Stock
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(Title of Class of Securities)
45232710
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(CUSIP Number)
December 31, 2003
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(Date of Event Which Requires Filing of this Statement)
Check the appropriate box to designate the rule pursuant to which this Schedule
is filed:
[ ] Rule 13d-1(b)
[ ] Rule 13d-1(c)
[X] Rule 13d-1(d)
*The remainder of this cover page shall be filled out for a reporting person's
initial filing on this form with respect to the subject class of securities, and
for any subsequent amendment containing information which would alter the
disclosures provided in a prior cover page.
The information required in the remainder of this cover page shall not be deemed
to be "filed" for the purpose of Section 18 of the Securities Exchange Act of
1934 ("Act") or otherwise subject to the liabilities of that section of the Act
but shall be subject to all other provisions of the Act (however, see the
Notes).
Page 1 of 15 Pages
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CUSIP NO. 45232710 13G PAGE 2 OF 15 PAGES
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1 NAMES OF REPORTING PERSONS
I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS (ENTITIES ONLY)
ARCH Venture Fund III, L.P.
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2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP (SEE INSTRUCTIONS)
(a) [ ]
(b) [ ]
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3 SEC USE ONLY
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4 CITIZENSHIP OR PLACE OF ORGANIZATION
Delaware
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5 SOLE VOTING POWER
0
NUMBER OF -------------------------------------------------------
SHARES 6 SHARED VOTING POWER
BENEFICIALLY
OWNED BY 3,315,298
EACH -------------------------------------------------------
REPORTING 7 SOLE DISPOSITIVE POWER
PERSON
WITH 0
-------------------------------------------------------
8 SHARED DISPOSITIVE POWER
3,315,298
--------------------------------------------------------------------------------
9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
3,315,298
--------------------------------------------------------------------------------
10 CHECK IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES (SEE
INSTRUCTIONS) [ ]
--------------------------------------------------------------------------------
11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)
10.09%
--------------------------------------------------------------------------------
12 TYPE OF REPORTING PERSON (SEE INSTRUCTIONS)
PN
--------------------------------------------------------------------------------
*SEE INSTRUCTIONS BEFORE FILLING OUT!
Page 2 of 15 Pages
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CUSIP NO. 45232710 13G PAGE 3 OF 15 PAGES
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1 NAMES OF REPORTING PERSONS
I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS (ENTITIES ONLY)
ARCH Venture Partners, L.L.C.
--------------------------------------------------------------------------------
2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP (SEE INSTRUCTIONS)
(a) [ ]
(b) [ ]
--------------------------------------------------------------------------------
3 SEC USE ONLY
--------------------------------------------------------------------------------
4 CITIZENSHIP OR PLACE OF ORGANIZATION
Delaware
--------------------------------------------------------------------------------
5 SOLE VOTING POWER
0
-------------------------------------------------------
NUMBER OF 6 SHARED VOTING POWER
SHARES
BENEFICIALLY 3,315,298
OWNED BY -------------------------------------------------------
EACH 7 SOLE DISPOSITIVE POWER
REPORTING
PERSON 0
WITH -------------------------------------------------------
8 SHARED DISPOSITIVE POWER
3,315,298
--------------------------------------------------------------------------------
9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
3,315,298
--------------------------------------------------------------------------------
10 CHECK IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES (SEE
INSTRUCTIONS) [ ]
--------------------------------------------------------------------------------
11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)
10.09%
--------------------------------------------------------------------------------
12 TYPE OF REPORTING PERSON (SEE INSTRUCTIONS)
OO
--------------------------------------------------------------------------------
*SEE INSTRUCTIONS BEFORE FILLING OUT!
Page 3 of 15 Pages
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CUSIP NO. 45232710 13G PAGE 4 OF 15 PAGES
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1 NAMES OF REPORTING PERSONS
I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS (ENTITIES ONLY)
Steven Lazarus
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2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP (SEE INSTRUCTIONS)
(a) [ ]
(b) [ ]
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3 SEC USE ONLY
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4 CITIZENSHIP OR PLACE OF ORGANIZATION
U.S.A
--------------------------------------------------------------------------------
5 SOLE VOTING POWER
4,625
-------------------------------------------------------
NUMBER OF 6 SHARED VOTING POWER
SHARES
BENEFICIALLY 3,315,298
OWNED BY -------------------------------------------------------
EACH 7 SOLE DISPOSITIVE POWER
REPORTING
PERSON 4,625
WITH -------------------------------------------------------
8 SHARED DISPOSITIVE POWER
3,315,298
--------------------------------------------------------------------------------
9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
3,315,298
--------------------------------------------------------------------------------
10 CHECK IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES (SEE
INSTRUCTIONS) [ ]
--------------------------------------------------------------------------------
11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)
10.11%
--------------------------------------------------------------------------------
12 TYPE OF REPORTING PERSON (SEE INSTRUCTIONS)
IN
--------------------------------------------------------------------------------
*SEE INSTRUCTIONS BEFORE FILLING OUT!
Page 4 of 15 Pages
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CUSIP NO. 45232710 13G PAGE 5 OF 15 PAGES
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1 NAMES OF REPORTING PERSONS
I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS (ENTITIES ONLY)
Keith Crandell
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2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP (SEE INSTRUCTIONS)
(a) [ ]
(b) [ ]
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3 SEC USE ONLY
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4 CITIZENSHIP OR PLACE OF ORGANIZATION
U.S.A
--------------------------------------------------------------------------------
5 SOLE VOTING POWER
5,395
-------------------------------------------------------
NUMBER OF 6 SHARED VOTING POWER
SHARES
BENEFICIALLY 3,315,298
OWNED BY -------------------------------------------------------
EACH 7 SOLE DISPOSITIVE POWER
REPORTING
PERSON 5,395
WITH -------------------------------------------------------
8 SHARED DISPOSITIVE POWER
3,315,298
--------------------------------------------------------------------------------
9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
3,320,693
--------------------------------------------------------------------------------
10 CHECK IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES (SEE
INSTRUCTIONS) [ ]
--------------------------------------------------------------------------------
11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)
10.11%
--------------------------------------------------------------------------------
12 TYPE OF REPORTING PERSON (SEE INSTRUCTIONS)
IN
--------------------------------------------------------------------------------
*SEE INSTRUCTIONS BEFORE FILLING OUT!
Page 5 of 15 Pages
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CUSIP NO. 45232710 13G PAGE 6 OF 15 PAGES
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1 NAMES OF REPORTING PERSONS
I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS (ENTITIES ONLY)
Robert Nelsen
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2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP (SEE INSTRUCTIONS)
(a) [ ]
(b) [ ]
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3 SEC USE ONLY
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4 CITIZENSHIP OR PLACE OF ORGANIZATION
U.S.A
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5 SOLE VOTING POWER
17,895
-------------------------------------------------------
NUMBER OF 6 SHARED VOTING POWER
SHARES
BENEFICIALLY 3,315,298
OWNED BY -------------------------------------------------------
EACH 7 SOLE DISPOSITIVE POWER
REPORTING
PERSON 17,895
WITH -------------------------------------------------------
8 SHARED DISPOSITIVE POWER
3,315,298
--------------------------------------------------------------------------------
9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
3,333,193
--------------------------------------------------------------------------------
10 CHECK IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES (SEE
INSTRUCTIONS) [ ]
--------------------------------------------------------------------------------
11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)
10.14%
--------------------------------------------------------------------------------
12 TYPE OF REPORTING PERSON (SEE INSTRUCTIONS)
IN
--------------------------------------------------------------------------------
*SEE INSTRUCTIONS BEFORE FILLING OUT!
Page 6 of 15 Pages
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CUSIP NO. 45232710 13G PAGE 7 OF 15 PAGES
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1 NAMES OF REPORTING PERSONS
I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS (ENTITIES ONLY)
Clinton Bybee
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2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP (SEE INSTRUCTIONS)
(a) [ ]
(b) [ ]
--------------------------------------------------------------------------------
3 SEC USE ONLY
--------------------------------------------------------------------------------
4 CITIZENSHIP OR PLACE OF ORGANIZATION
U.S.A
--------------------------------------------------------------------------------
5 SOLE VOTING POWER
5,088
-------------------------------------------------------
NUMBER OF 6 SHARED VOTING POWER
SHARES
BENEFICIALLY 3,315,298
OWNED BY -------------------------------------------------------
EACH 7 SOLE DISPOSITIVE POWER
REPORTING
PERSON 5,088
WITH -------------------------------------------------------
8 SHARED DISPOSITIVE POWER
3,315,298
--------------------------------------------------------------------------------
9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
3,320,386
--------------------------------------------------------------------------------
10 CHECK IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES (SEE
INSTRUCTIONS) [ ]
--------------------------------------------------------------------------------
11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)
10.11%
--------------------------------------------------------------------------------
12 TYPE OF REPORTING PERSON (SEE INSTRUCTIONS)
IN
--------------------------------------------------------------------------------
*SEE INSTRUCTIONS BEFORE FILLING OUT!
Page 7 of 15 Pages
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CUSIP NO. 45232710 13G PAGE 8 OF 15 PAGES
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Schedule 13G
Item 1(a). Name of Issuer: Illumina, Inc. (the "Issuer").
Item 1(b). Address of Issuer's Principal Executive Offices: 9885 Towne
Center Dr., San Diego, CA 92121.
Item 2(a). Names of Persons Filing: ARCH Venture Fund III, L.P. ("ARCH
Venture Fund III"); ARCH Venture Partners, L.L.C. ("AVP LLC")
(collectively, the "Reporting Entities" and individually, each
a "Reporting Entity") and Steven Lazarus ("Lazarus"), Keith
Crandell ("Crandell"), Robert Nelsen ("Nelsen") and Clinton
Bybee ("Bybee") (collectively, the "Managing Directors" and
individually, each a "Managing Director"). The Reporting
Entities and the Managing Directors collectively are referred
to as the "Reporting Persons".
Item 2(b). Address of Principal Business Office or, if None, Residence:
8725 W. Higgins Road, Suite 290, Chicago, IL 60631.
Item 2(c). Citizenship: ARCH Venture Fund III is a limited partnership
organized under the laws of the State of Delaware. AVP LLC is
a limited liability company organized under the laws of the
State of Delaware. Each Managing Director is a US citizen.
Item 2(d). Title of Class of Securities: Common Stock, $.01 par value
(the "Common Stock").
Item 2(e). CUSIP Number: 45232710
Item 3. If this statement is filed pursuant to Sections 240.13d-1(b)
or 240.13d-2(b) or (c), check whether the person filing is a:
Not Applicable.
Item 4. Ownership.
(a) Amount beneficially owned:
ARCH Venture Fund III is the record owner of
3,315,298 shares of Common Stock (the "Record
Shares") as of December 31, 2003. As the sole general
partner of ARCH Venture Fund III, AVP LLC may be
deemed to own the Record Shares. As individual
general partners or managing directors of AVP LLC,
each Managing Director may also be deemed to share
the power and direct the disposition and vote of the
Record Shares. In addition, as of December 31, 2003,
Lazarus is the record holder of 4,625 shares of
Common Stock, Bybee is the record holder of 5,088
shares of Common Stock, Crandell is the holder of
5,395 shares of Common Stock, and Nelsen is the
record owner of 10,395 shares of Common Stock and
owns an option that is exercisable to purchase 7,500
shares of Common Stock ("Option Shares").
Page 8 of 15 Pages
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CUSIP NO. 45232710 13G PAGE 9 OF 15 PAGES
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(b) Percent of class:
Each reporting person except the Managing Directors:
10.09%. Each of the Managing Directors, excluding
Nelsen: 10.11%. Nelsen: 10.14%. The foregoing
percentages are calculated based on the 32,850,123
shares of Common Stock reported to be outstanding in
the Issuer's Form 10-Q filed with the Securities and
Exchange Commission on November 4, 2003 (the
"Reported Shares"). Nelsen's percentage is calculated
based on 32,857,623 shares, which included the
Reported Shares and the Option Shares.
(c) Number of shares as to which the person has:
(i) Sole power to vote or to direct the vote:
0 shares for each Reporting Person except
the Managing Directors. 4,625 shares for
Lazarus, 5,088 shares for Bybee, 5,395
shares for Crandell and 17,895 shares for
Nelsen, which includes the Option Shares.
(ii) Shared power to vote or to direct the vote:
Each of the Reporting Persons: 3,315,298.
(iii) Sole power to dispose or to direct the
disposition of:
0 shares for each Reporting Person except
the Managing Directors. 4,625 shares for
Lazarus, 5,088 shares for Bybee, 5,395
shares for Crandell and 17,895 shares for
Nelsen, which includes the Option Shares.
(iv) Shared power to dispose or to direct the
disposition of:
Each of the Reporting Persons: 3,315,298.
Each Reporting Person disclaims beneficial ownership of such
shares of Common Stock except for the shares, if any, such
Reporting Person holds of record.
Item 5. Ownership of Five Percent or Less of a Class.
Not Applicable.
Item 6. Ownership of More than Five Percent on Behalf of Another
Person.
Not Applicable.
Item 7. Identification and Classification of the Subsidiary which
Acquired the Security Being Reported on By the Parent Holding
Company or Control Person.
Not Applicable.
Item 8. Identification and Classification of Members of the Group.
Page 9 of 15 Pages
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CUSIP NO. 45232710 13G PAGE 10 OF 15 PAGES
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Not Applicable. The Reporting Persons expressly disclaim
membership in a "group" as used in Rule 13d-1(b)(ii)(J).
Item 9. Notice of Dissolution of Group.
Not Applicable.
Item 10. Certification.
Not Applicable. This statement on Schedule 13G is not filed
pursuant to Section 240.13d-1(b) nor Section 240.13d-1(c).
Page 10 of 15 Pages
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CUSIP NO. 45232710 13G PAGE 11 OF 15 PAGES
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SIGNATURES
After reasonable inquiry and to the best of my knowledge and belief, I
certify that the information set forth in this statement is true, complete and
correct.
Dated: February 11, 2004
ARCH VENTURE FUND III, L.P.
By: ARCH Venture Partners, L.L.C.
its General Partner
By: *
----------------------------
Steven Lazarus
Managing Director
ARCH VENTURE PARTNERS, L.L.C.
By: *
----------------------------
Steven Lazarus
Managing Director
*
----------------------------
Steven Lazarus
*
----------------------------
Keith Crandell
*
----------------------------
Robert Nelsen
*
---------------------------
Clinton Bybee
* By: /s/ Mark McDonnell
---------------------
Mark McDonnell as
Attorney-in-Fact
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This Schedule 13G was executed by Mark McDonnell pursuant to Powers of Attorney
attached hereto as Exhibit 2 and incorporated herein by reference.
Page 11 of 15 Pages