Ownership Submission
FORM 4
Check this box if no longer subject to Section 16. Form 4 or Form 5 obligations may continue. See Instruction 1(b).
UNITED STATES SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549

STATEMENT OF CHANGES IN BENEFICIAL OWNERSHIP OF SECURITIES

Filed pursuant to Section 16(a) of the Securities Exchange Act of 1934, Section 17(a) of the Public Utility Holding Company Act of 1935 or Section 30(h) of the Investment Company Act of 1940
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(Print or Type Responses)
1. Name and Address of Reporting Person *
SCOTT STEVEN LEE
  2. Issuer Name and Ticker or Trading Symbol
CRAY INC [CRAY]
5. Relationship of Reporting Person(s) to Issuer
(Check all applicable)
_____ Director _____ 10% Owner
__X__ Officer (give title below) _____ Other (specify below)
Senior VP & CTO
(Last)
(First)
(Middle)
901 FIFTH AVENUE,, SUITE 1000
3. Date of Earliest Transaction (Month/Day/Year)
03/20/2009
(Street)

SEATTLE, WA 98164
4. If Amendment, Date Original Filed(Month/Day/Year)
6. Individual or Joint/Group Filing(Check Applicable Line)
_X_ Form filed by One Reporting Person
___ Form filed by More than One Reporting Person
(City)
(State)
(Zip)
Table I - Non-Derivative Securities Acquired, Disposed of, or Beneficially Owned
1.Title of Security
(Instr. 3)
2. Transaction Date (Month/Day/Year) 2A. Deemed Execution Date, if any (Month/Day/Year) 3. Transaction Code
(Instr. 8)
4. Securities Acquired (A) or Disposed of (D)
(Instr. 3, 4 and 5)
5. Amount of Securities Beneficially Owned Following Reported Transaction(s)
(Instr. 3 and 4)
6. Ownership Form: Direct (D) or Indirect (I)
(Instr. 4)
7. Nature of Indirect Beneficial Ownership
(Instr. 4)
Code V Amount (A) or (D) Price

Reminder: Report on a separate line for each class of securities beneficially owned directly or indirectly.
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Table II - Derivative Securities Acquired, Disposed of, or Beneficially Owned
(e.g., puts, calls, warrants, options, convertible securities)
1. Title of Derivative Security
(Instr. 3)
2. Conversion or Exercise Price of Derivative Security 3. Transaction Date (Month/Day/Year) 3A. Deemed Execution Date, if any (Month/Day/Year) 4. Transaction Code
(Instr. 8)
5. Number of Derivative Securities Acquired (A) or Disposed of (D)
(Instr. 3, 4, and 5)
6. Date Exercisable and Expiration Date
(Month/Day/Year)
7. Title and Amount of Underlying Securities
(Instr. 3 and 4)
8. Price of Derivative Security
(Instr. 5)
9. Number of Derivative Securities Beneficially Owned Following Reported Transaction(s)
(Instr. 4)
10. Ownership Form of Derivative Security: Direct (D) or Indirect (I)
(Instr. 4)
11. Nature of Indirect Beneficial Ownership
(Instr. 4)
Code V (A) (D) Date Exercisable Expiration Date Title Amount or Number of Shares
Stock Option (right to buy Common Stock) $ 20 03/20/2009   D(1)     547 03/21/2005 07/01/2010 Common Stock 547 $ 0.1 185,596 D  
Stock Option (right to buy Common Stock) $ 10.12 03/20/2009   D(1)     948 03/21/2005 02/07/2011 Common Stock 948 $ 0.1 184,648 D  
Stock Option (right to buy Common Stock) $ 10.36 03/20/2009   D(1)     7,292 03/21/2005 04/29/2012 Common Stock 7,292 $ 0.1 177,356 D  
Stock Option (right to buy Common Stock) $ 16.4 03/20/2009   D(1)     3,907 03/21/2005 07/12/2012 Common Stock 3,907 $ 0.1 173,449 D  
Stock Option (right to buy Common Stock) $ 27.56 03/20/2009   D(1)     3,628 03/21/2005 02/05/2014 Common Stock 3,628 $ 0.1 169,821 D  
Stock Option (right to buy Common Stock) $ 27.56 03/20/2009   D(1)     8,871 03/21/2005 02/05/2014 Common Stock 8,871 $ 0.1 160,950 D  
Stock Option (right to buy Common Stock) $ 14.76 03/20/2009   D(1)     6,250 03/21/2005 09/20/2014 Common Stock 6,250 $ 0.1 154,700 D  
Stock Option (right to buy Common Stock) $ 14 03/20/2009   D(1)     6,250 12/31/2005 05/11/2015 Common Stock 6,250 $ 0.215 148,450 D  
Stock Option (right to buy Common Stock) $ 12 03/20/2009   D(1)     6,250 12/31/2005 05/11/2015 Common Stock 6,250 $ 0.383 142,200 D  
Stock Option (right to buy Common Stock) $ 10 03/20/2009   D(1)     6,250 12/31/2005 05/11/2015 Common Stock 6,250 $ 0.57 135,950 D  
Stock Option (right to buy Common Stock) $ 8 03/20/2009   D(1)     6,250 12/31/2005 05/11/2015 Common Stock 6,250 $ 0.783 129,700 D  
Stock Option (right to buy Common Stock) $ 10.56 03/20/2009   D(1)     9,400 12/19/2007 12/19/2016 Common Stock 9,400 $ 0.7 120,300 D  
Stock Option (right to buy Common Stock) $ 10.56 03/20/2009   D(1)     12,700 12/19/2007 12/19/2016 Common Stock 12,700 $ 0.7 107,600 D  

Reporting Owners

Reporting Owner Name / Address Relationships
 Director  10% Owner  Officer  Other
SCOTT STEVEN LEE
901 FIFTH AVENUE,
SUITE 1000
SEATTLE, WA 98164
      Senior VP & CTO  

Signatures

 Steven L. Scott by Kenneth W. Johnson, Attorney-in-Fact   03/24/2009
**Signature of Reporting Person Date

Explanation of Responses:

* If the form is filed by more than one reporting person, see Instruction 4(b)(v).
** Intentional misstatements or omissions of facts constitute Federal Criminal Violations. See 18 U.S.C. 1001 and 15 U.S.C. 78ff(a).
(1) The options were tendered in exchange for a cash payment pursuant to an issuer tender offer described in the Tender Offer Statement on Schedule TO filed with the Commission on February 20, 2009, as amended on March 10, 2009. This transaction is exempt from Section 16(b) of the Securities Exhange Act of 1934 pursuant to Rule 16b-3(e).

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